Software

Software Nodo Catalunya-BIO

Name: CompARE

Autores: Guadalupe Gómez Melis, Marta Bofill Roig, Jordi Cortés Martínez i Moisés Gómez Mateu

Descripción: CompARE is a free online platform to help investigators to design randomized clinical trials with composite endpoint. Following features are available:

  • Choose the primary endpoint
  • Evaluate the gain in efficiency of using a primary composite endpoint either in the context of time-to-event or binary outcome.
  • Obtain the sample size for a composite endpoint based on the information on its components and the correlation between them.
  • Obtain the sample size of an study using a single endpoint.
  • Get helpful numerical and intuitive graphical results.

Página web: https://cinna.upc.edu/compare

 


Nombre: FHtest

Autores: Ramon Oller, Klaus Langohr

Descripción: FHtest offers several tests for the comparison of two or more survival curves:

a) The Fleming-Harrington test for right-censored data based on permutations and on counting processes.

b) Extension of the Fleming-Harrington test for interval-censored data based on a permutation distribution and on a score vector distribution.

The article related with this package can be find here.

 

Página web: http://cran.r-project.org/web/packages/FHtest/index.html

 


Nombre: mbmdr

Autores: Víctor Urrea, M.Luz Calle, Kristel van Steen, Núria Malats

Descripción: Model Based Multifactor Dimension Reduction proposed by Calle et al. (2008) as a dimension reduction method for exploring gene-gene interactions.

Página web: http://cran.r-project.org/web/packages/mbmdr/index.html

 


Nombre: AUCFR

Autores: Víctor Urrea, M.Luz Calle

Descripción: Variable selection using Random Forest based on optimizing the area-under-the ROC curve (AUC) of the Random Forest.

Página web: http://cran.r-project.org/web/packages/AUCRF/index.html

 


Nombre: bwsurvival

Autores: Carles Serrat, Guadalupe Gómez, Victoria Moneta

Descripción: This R package implements the conditional survival function described in ‘Nonparametric bivariate estimation for successive survival times’ (C. Serrat and G. Gómez, 2007).

Página web: http://cran.r-project.org/web/packages/bwsurvival/index.html

 


Nombre:  ICGE

Autores:  Itziar Irigoien, Basilio Sierra, Concepción Arenas

Descripción: This R package implements the method for detecting relevant clusters and atypical units in gene expression described in ‘ICGE: an R package for detecting relevant clusters and atypical units in gene expression ’ (I. Irigoien, B. Sierra and C. Arenas, 2012).

Página web: https://cran.r-project.org/web/packages/ICGE/index.html

 


Nombre: WeDiBaDis

Autores: Itziar Irigoien, Francisco Mestres, Concepción Arenas

Descripción: This R package implements the weighted distance based discriminant analysis described in ‘ Weighted distance based discriminant analysis: the R package WeDiBaDis ’ (I. Irigoien, F. Mestres and C. Arenas, 2016).

Página web: https://github.com/ItziarI/WeDiBaDis

 


 

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